<div style="color: #7294D4"><strong>SATB2 3D Genome Viewer</strong></div>

SATB2 3D Genome Viewer

HiC matrices
Insulation

Main parameters

To start select the desired Hi-C resolution to be displayed and load the data by clicking the button below.

Upper triangle:

Lower triangle:

Chromosome

Start

End

Select the type of the plot to be displayed:

In the dual mode, the plot shows the matrices chosen to be displayed in the upper and lower triangle

In the differential mode, the matrix displayed in the lower triangle is subtracted from the matrix displayed in the upper triangle: red is therefore more contacts in the lower and blue denotes more contacts in the upper

Chromatin loops

Select to draw a circle around the location of the loops called at 5kb. To unselect press 'Ctrl + right click'

Select color of loops:

Topologically Associating Domains

Select to display TADs called in genotype-specific matrix at 25kb. To unselect press 'Ctrl + right click'

Select color of TADs:

Select region to display loops and TADs

Upper limit of contacts:

Other features

Load bedfile(s) of interest

Browse...

The plot shows the floxed and cKO insulation-scores and the difference between them at 10kb resolution

Select chromosome

Start

End

Select desired genome coordinates, then press RUN button